FISSA (Fast Image Signal Separation Analysis) is a Python package for decontaminating somatic signals from two-photon calcium imaging data. It can read images in tiff format and ROIs from zip files exported by ImageJ; or operate on numpy arrays, generated by importing files stored in other or as the output of other packages.
For details of the algorithm, please see our companion paper published in Scientific Reports.
- FISSA User Guide
- API Reference
- Contributing code