FISSA Documentation

FISSA (Fast Image Signal Separation Analysis) is a Python package for decontaminating somatic signals from two-photon calcium imaging data. It can read images in tiff format and ROIs from zip files exported by ImageJ; or operate on numpy arrays, generated by importing files stored in other or as the output of other packages.

For details of the algorithm, please see our companion paper published in Scientific Reports.

Contents:

• FISSA User Guide
  • Usage
  • Installation
  • Citing FISSA
  • License
• Usage Examples
  • Basic FISSA usage
  • Object-oriented FISSA interface
  • Using FISSA with Suite2p
  • Using FISSA with SIMA
  • Using FISSA with CNMF from MATLAB
• API Reference
  • fissa package
• Contributing code
  • Reporting Issues
  • Documentation
  • How to contribute
  • Notes
• Changelog
  • Unreleased
  • Version 1.0.0
  • Version 0.7.2
  • Version 0.7.1
  • Version 0.7.0
  • Version 0.6.4
  • Version 0.6.3
  • Version 0.6.2
  • Version 0.6.1
  • Version 0.6.0
  • Version 0.5.3
  • Version 0.5.2
  • Version 0.5.1
  • Version 0.5.0
• Credits
  • Development
  • Supervision
  • Testing
  • External Code
  • Funding
  • Citation

Indices and tables

• Index

• Module Index

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FISSA User Guide